Simulation of Self Assembly

 

This page lists conference talks, seminars and poster presentations by members of the team that are relevant to the Self Assembly programme.

13 October 2015: Physics seminar (SISSA, Trieste, Italy)

Mark Miller: Controlling the self-assembly of discrete structures

18 September 2015: Thermodynamics 2015 (Copenhagen, Denmark)

Mark Miller: Optimisation of interactions and pathways for self assembly

26 August 2015: KITPC Workshop on Controlled structural formation of soft matter (Beijing, China)

Daan Frenkel: Towards addressable self assembly

20 August 2015: Berni Alder's 90th Birthday Symposium (Lawrence Livermore National Laboratory, USA))

Daan Frenkel: Simple models complex structures

13 August 2015: Gordon Research Conference on Soft Condensed Matter Physics (Colby-Sawyer College, New London NH, USA))

Daan Frenkel: Addressable Self Assembly

8 July 2015: Seminar (Max-Planck Institute for Solid State Research, Stuttgart, Germany)

Roy Johnston: Computational studies of surface-supported clusters and nanoparticles

21 to 23 June 2015: 46th Annual Conference of the British Association of Crystal Growth (London, UK)

Roy Johnston: DFT-based global optimisation of free and supported metal clusters (plenary lecture)

25 March 2015: Physics seminar (University of Luxembourg)

Mark Miller: Design strategies for self assembly

23 February 2015: Physics seminar (University of Surrey, UK)

Mark Miller: Design strategies for self assembly

14 February 2015: Public lecture (Café Scientifique, Durham, UK)

Mark Miller: Knots

29 October 2014: Research seminar (University of Southampton, UK)

Jonathan Doye: Coarse-grained modelling of nucleic acids: Biophysics and nanotechnology

24 to 27 September 2014: CECAM workshop on Physics of colloidal particles with heterogeneously patterned surfaces (Vienna, Austria)

Jonathan Doye: DNA multi-arm motifs as patchy particles: Polyhedra and quasicrystals

10 to 13 September 2014: CECAM workshop on Knots in Soft Condensed Matter (Vienna, Austria)

(Hosted by Mark Miller and Ivan Coluzza [University of Vienna])
David Wales: Folding pathways for knotted proteins and clusters

8 September 2014: Research seminar (Laboratoire de Biochimie Théorique, Université Paris 7, France)

Jonathan Doye: Coarse-grained modelling of nucleic acids: Biophysics and nanotechnology

15 to 21 August 2014: Energy Landscapes: From Molecules to Soft Matter (Durham, UK)

(Hosted by Mark Miller, Halim Kusumaatmaja and David Wales)
David Wales: Exploring energy landscapes: From molecules to nanodevices
Roy Johnston: Exploring the energy landscapes and self-assembly of cyclic peptides
Yassmine Chebaro: Exploring the conformational ensemble of an intrinsically disordered protein
Lewis Smeeton: Global optimisation of hydrated sulfate clusters
Cheng Shang: Pathway search in biology molecules
Andrew Ballard: Superposition-enhanced estimation of optimal temperature spacings for parallel tempering simulations
James Farrell: Clusters of coarse-grained water molecules

13 to 15 July 2014: 45th Annual Conference of the British Association of Crystal Growth (Leeds, UK)

Jonathan Doye: Simulating the nucleation of ice

7 to 11 July 2014: Telluride Workshop: Searching for Reaction Coordinates (Telluride, Colorado USA)

David Wales: Rare event dynamics without a reaction coordinate

3 to 7 July 2014: 14th International Conference on Computational and Mathematical Methods in Science and Engineering (Cadiz, Spain)

Mark Miller: Knots, links and coils in clusters of dipolar particles

26 to 30 May 2014: SoftComp Annual Meeting (Heraklion, Greece)

Mark Miller: Modelling selectivity and coupling in protein-substrate binding

14 to 17 April 2014: 11th Annual Conference on Foundations of Nanoscience (Snowbird, USA)

Jonathan Doye: Coarse-grained modelling for DNA nanotechnology

3 April 2014: Research seminar (Nagoya University, Japan)

David Wales: Exploring energy landscapes: From molecules to nanodevices

2 to 4 April 2014: CECAM workshop on From Atoms to Clouds: Bridging the Gap Between Atomistic Simulation, Surface Science, Atmospheric Observation and Climate Modelling (Zürich, Switzerland)

Jonathan Doye: Simulating the nucleation of ice
Flavio Romano: A new perspective on ice crystallization

27 March 2014: Research seminar (Institute for Molecular Science, Okazaki, Japan)

David Wales: The potential energy landscape perspective

10 to 12 March 2014: CECAM workshop on Biological Molecules Under Non-Natural Conditions (Stuttgart, Germany)

David Wales: Energy landscapes for biological molecules under non-natural conditions

March 2014: Instituto Química-Física Rocasolano, CSIC (Madrid, Spain)

Jonathan Doye: Coarse-grained modelling of DNA: DNA nanotechnology and DNA biophysics

14 March 2014: Celebrating the 60th Anniversary of the Asakura-Oosawa Theory (Nagoya University, Japan)

Daan Frenkel: Entropy, order and disorder

2 to 6 February 2014: 552nd Wilhelm and Else Heraeus Seminar: Physics of Biomolecular Folding and Assembly (Bad Honnef, Germany)

David Wales: Energy landscapes for biomolecular folding and assembly

24 January 2014: Institute for Complex Molecular Systems (ICMS) Outreach Symposium (Eindhoven, The Netherlands)

Daan Frenkel: Why one plus one is not two

7 to 9 January 2014: CCP conference on Multiscale Modelling of Condensed Phase and Biological Systems (Manchester, UK)

Jonathan Doye: Coarse-grained modelling of DNA

19 December 2013: Workshop on Global Optimisation (Imperial College London, UK)

Roy Johnston: Combining GA-DFT global optimisation and experiment to determine the structures of gas phase metal clusters
David Wales: Energy landscapes and global optimisation

2 to 5 December 2013: CECAM workshop on DNA-Based Self-Assembly: Theory, Simulations and Experiments (Vienna, Austria)

Flavio Romano: Sequence design for DNA vitrimers

November 2013: Physics seminar (University of Leeds, UK)

Jonathan Doye: DNA nanotechnology and DNA biophysics

November 2013: Research seminar (Bioinformatics Institute A*STAR, Singapore)

David Wales: Exploring energy landscapes: From molecules to nanodevices

5 to 8 November 2013: Workshop on Modeling Rare Events in Complex Physical Systems (National University of Singapore)

David Wales: Exploring energy landscapes: From molecules to nanodevices

20 November 2013: Workshop on Hierarchical Materials for Green Energy (Advanced Institute for Materials Research, Tohoku, Japan)

David Wales: The energy landscapes perspective: Theory and simulation of novel materials

9 October 2013: From Dynamics to Statistical Physics and Back (Dresden, Germany)

David Wales: Exploring energy landscapes: From molecules to nanodevices

24 to 27 September 2013: CECAM Workshop on Coupling between protein, water, and lipid dynamics in complex biological systems: Theory and experiments (Lausanne, Switzerland)

David Wales: Exploring energy landscapes with explicit and implicit water

15 to 20 September 2013: Theory of Atomic and Molecular Clusters VII (Birmingham, UK)

Mark Oakley: Self-assembly of cyclic peptide nanotubes

9 to 13 September 2013: FisMat 2013 (Milan, Italy)

Daan Frenkel: Entropy and self assembly

8 to 12 September 2013: 246th ACS Meeting, Session on Water and Hydration (Indianapolis, USA)

David Wales: Energy landscapes and tunneling splittings for water clusters

15 to 19 July 2013: Energy Landscapes: Structure, Dynamics and Exploration Algorithms (Telluride, Colorado USA)

Roy Johnston:
Direct DFT global optimization using a genetic algorithm: comparing theory and experiment
Mark Oakley:
Energy landscapes of cyclic and acyclic peptides
Lewis Smeeton:
Energy landscape visualisation

30 June to 2 July 2013: Programmable Self Assembly of Matter (New York University, USA)
Daan Frenkel: Role of entropy in DNA-mediated self assembly

26 to 28 June 2013: EUROPT2013 (Florence, Italy)

Mark Oakley: Exploiting symmetry in the global optimisation of atomic clusters

May 2013: CECAM workshop on The Role of Interfaces in Crystallisation (Lausanne, Switzerland)

Jonathan Doye: Simulating the homogeneous nucleation of ice

23 April to 8 May 2013: The Hinshelwood Lectures (University of Oxford, UK)

Daan Frenkel
23 April: Order from disorder
25 April: The birth of a crystal
1 May: Packing and over-packing
2 May: Experiments as simulations
7 May: Simulations: The dark side
9 May: Multivalency: Why one plus one is not two

5 April 2013: Physics of Fluids Seminar (Twente University, The Netherlands)

Daan Frenkel: The unexpected side of entropy

2 April 2013: Widely Applied Mathematics Lecture (Harvard, USA)

Daan Frenkel: The unexpected side of entropy

March 2013: CECAM workshop on Self-Assembly: From Fundamental Principles to Design Rules for Experiment (Lausanne, Switzerland)

Jonathan Doye: Self-assembly for patchy particles and DNA

21 to 23 March 2013: Joint Meeting of the British and German Biophysical Society (Hühnfeld, Germany)

David Wales: Energy landscapes and the structure and dynamics of biomolecules

20 March 2013: 7th International Conference on Theory of Atomic and Molecular Clusters Nanoalloys as Advanced Materials (Birmingham, UK)

David Wales: Exploring energy landscapes: From molecules to nanodevices

18 to 22 March 2013: COST Training School: Molecular Processes for Astronomy (Grenoble, France)

David Wales: Potential energy landscape theory and applications

18 to 22 March 2013: Isaac Newton Institute Workshop on The Mathematics of Liquid Crystals (Cambridge, UK)

Daan Frenkel: The physics of unphysical simulations

8 March 2013: Chemistry Seminar (University of Glasgow, UK)

Daan Frenkel: The unexpected side of entropy

28 February 2013: Interdisciplinary Computing and Complex Systems (ICOS) Research Group (University of Nottingham, UK)

Roy Johnston: Exploring the energy landscapes of cyclic peptides

13 February 2013: Widely Applied Mathematics Lecture (Harvard, USA)

David Wales: Exploring energy landscapes: From molecules to nanodevices

12 February 2013: Physical Chemistry Seminar (Boston University, USA)

David Wales: New developments in energy landscape theory

19 September 2012: Molecular Modelling and HPC Showcase (Nottingham, UK)

Mark Oakley: Energy Landscapes of Proteins and Peptides

4 to 7 September 2012: CECAM workshop on Design of Self-Assembling Materials (Vienna, Austria)

Mark Miller:
Modelling selectivity and coupling in protein-substrate binding
Jonathan Doye:
Coarse-grained modelling of DNA biophysics
Flavio Romano:
Self-assembly of a colloidal tetrastack

16 to 21 July 2012: Energy Landscapes (Obergurgl, Austria)

This meeting was chaired by David Wales.
Vanessa de Souza:
Crystallisation in the potential energy landscape
Roy Johnston:
Energy landscape mapping and global optimisation for metal clusters and nanoalloys
Jonathan Doye:
Free energy landscapes for DNA self-assembly
James Farrell:
Poster: Benchmarking global minimisation algorithms
Halim Kusumaatmaja:
Poster: Defect motifs on constant mean curvature surfaces
Mark Oakley:
Poster: Energy landscapes of cyclic peptides
Lewis Smeeton:
Poster: Visualisation of energy landscapes

27 June 2012: CCP-BioSim Conference on Frontiers of Biomolecular Simulation (Cirecester, UK)

David Wales: Exploring energy landscapes: From molecules to nanodevices

May 2012: University of Lyon (Lyon, France)

David Wales delivered a series of lectures on energy landscapes as a Visiting Professor.

21 to 23 May 2012: CECAM Workshop on Anchoring Simulations to Experiments: Challenges for Understanding and Treating Alzheimer's Disease (Paris, France)

David Wales: Energy landscapes for folded and misfolded proteins

26 to 29 March 2012: Beyond Molecular Dynamics (BEMOD) workshop (Dresden, Germany)

David Wales: Exploring energy landscapes

9 January 2012: Seminar at the ICAMS centre (Bochum, Germany)

David Wales: Energy landscapes: From molecules to nanodevices

9 to 13 December 2011: 5th Asian Pacific Conference of Theoretical and Computational Chemistry (Rotorua, New Zealand)

Roy Johnston: Global optimisation of nanoalloys using density functional theory

6 to 10 September 2011: 8th Liquid Matter Conference of the European Physical Society (Vienna, Austria)

Laura Filion:
Self-assembly of a colloidal interstitial solid solution with tunable sublattice doping
Mark Miller:
Structure and stability of electrospray droplets

25 July to 5 August 2011: Workshop on Energy Landscapes (Telluride, Colorado USA)

This meeting was organised and chaired by David Wales.
Laura Filion:
Crystal nucleation of hard spheres: A numerical study
Mark Miller:
Controlling the selectivity and cooperativity of protein-substrate binding
Mark Oakley:
Energy landscape and global optimisation for a frustrated model protein
Vanessa de Souza:
Crystallisation in the energy landscape

24 to 29 July 2011: Gordon Research Conference on the Chemistry and Physics of Liquids (New Hampshire, USA)

Vanessa de Souza:
Crystallisation in the energy landscape
Jonathan Doye:
Phase behaviour of patchy particles

20 to 22 July 2011: From Computational Biophysics to Systems Biology (Jülich, Germany)

David Wales: Exploring energy landscapes: From molecules to nanodevices

5 to 8 July 2011: Growth of Hierarchical Functional Materials in Complex Fluids (Beijing, China)

Daan Frenkel:
Relation between crystal nucleation, demixing and wetting
Mark Miller:
Dynamics and topology of dipolar gels

5 to 8 July 2011: CECAM workshop on Coarse-Graining Srategies and Methodologies for Polymeric and Biomolecular Assemblies (Lyon, France)

Jonathan Doye: Coarse-grained modelling of DNA

5 to 6 July 2011: University of Nottingham HPC User Conference (Nottingham, UK)

Roy Johnston: Global optimisation and energy landscape exploration for nanoparticles and proteins

22 June 2011: 2nd BEAR Postgraduate Conference (Birmingham, UK)

David Wales:
Exploring energy landscapes: From molecules to nanodevices
Mark Oakley:
Exploring energy landscapes with genetic algorithms and basin hopping

19 to 21 May 2011: CECAM workshop on Molecular Simulation in External Electric and Electromagnetic Fields (Dublin, Ireland)

David Wales: Exploring energy landscapes: From molecules to nanodevices

11 to 15 April 2011: IPAM meeting on Exploring Structure Space, workshop on Optimization, Search and Graph-Theoretical Algorithms for Chemical Compound Space (UCLA, USA)

David Wales: Exploring energy landscapes: From molecules to nanodevices

24 February 2011: Bridging the Gap Workshop 7 - Dynamic Optimisation in an Uncertain World: Challenges and State-of-the Art (Birmingham, UK)

Roy Johnston: Optimisation and landscape analysis for studying protein folding

7 to 8 February 2011: Second International Conference on Quantitative Biology and Bioinformatics in Modern Medicine (Dublin, Ireland)

Roy Johnston: Visualisation and Complexity Analysis of Energy Landscapes for Protein Folding

29 January 2011: Biophysics seminar (University of Oxford, UK)

Jonathan Doye: DNA, patchy particles and protein complexes

26 January 2011: Complexity Forum (University of Warwick, UK)

Jonathan Doye: Exploring the self-assembly of complex objects

15 to 17 November 2010: BioScience Workshop (Jülich, Germany)

David Wales: Energy landscapes: From biomolecules to mesoscopic systems

4 to 7 October 2010: CECAM workshop on Protein Folding Dynamics (Lausanne, Switzerland)

David Wales: Energy landscapes: From biomolecules to mesoscopic systems